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I wouldn't like to advise on the first question apart to say that one way would be to try using an email client like Thunderbird to copy the emails from one account to the FM folder of your choice.
Regarding email for an alias....
For incoming mail, make a Rule under Settings->Rules that puts incoming mail with that alias in the "To" field into the folder you desire.
For outgoing mail for that alias...
Go to Settings -> Sending Identities.
Make an identity for that alias. In this UI there is an option to select the folder that you would like sent mail to by saved into.
See the FM help page for "Identities" for more details.
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